Variant report
Variant | rs6964756 |
---|---|
Chromosome Location | chr7:33530048-33530049 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10225698 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes] |
rs10230133 | 0.86[JPT][hapmap] |
rs10247780 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11972278 | 0.90[JPT][hapmap] |
rs12665869 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes] |
rs12669595 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
rs13241465 | 0.89[CHB][hapmap] |
rs1345277 | 0.85[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1362228 | 0.89[CHB][hapmap] |
rs1362230 | 0.90[CHB][hapmap] |
rs1419900 | 0.95[CHB][hapmap] |
rs1419903 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1419909 | 0.95[CHB][hapmap] |
rs1419914 | 0.95[CHB][hapmap] |
rs1419916 | 0.89[CHB][hapmap] |
rs1419918 | 0.90[CHB][hapmap] |
rs1419919 | 0.89[CHB][hapmap] |
rs1419921 | 0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
rs1419925 | 0.83[CHB][hapmap];0.90[JPT][hapmap] |
rs1419927 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
rs1419928 | 0.90[JPT][hapmap] |
rs1473155 | 0.82[ASN][1000 genomes] |
rs1544557 | 0.95[CHB][hapmap] |
rs1860600 | 0.95[CHB][hapmap] |
rs1894810 | 0.95[CHB][hapmap] |
rs2041419 | 0.84[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes] |
rs2058342 | 0.94[CHB][hapmap] |
rs2392233 | 0.91[JPT][hapmap] |
rs2392234 | 0.82[ASN][1000 genomes] |
rs2392236 | 0.95[CHB][hapmap] |
rs2893469 | 0.95[CHB][hapmap] |
rs4141012 | 0.90[CHB][hapmap] |
rs4236337 | 0.89[CHB][hapmap] |
rs4509212 | 0.89[CHB][hapmap] |
rs4510745 | 0.90[CHB][hapmap] |
rs4582453 | 0.95[CHB][hapmap] |
rs4607502 | 0.95[CHB][hapmap] |
rs4637716 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4720118 | 0.84[CHB][hapmap];0.90[JPT][hapmap] |
rs4720120 | 0.84[CHB][hapmap] |
rs4723285 | 0.95[JPT][hapmap] |
rs4723288 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
rs6462477 | 0.84[CHB][hapmap];0.90[JPT][hapmap] |
rs6462479 | 0.89[CHB][hapmap] |
rs6977009 | 0.86[JPT][hapmap] |
rs721851 | 0.95[CHB][hapmap] |
rs723300 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs726463 | 0.95[CHB][hapmap] |
rs726464 | 0.95[CHB][hapmap] |
rs758779 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
rs758780 | 0.84[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes] |
rs7785012 | 0.95[CHB][hapmap] |
rs7798984 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7802888 | 0.91[JPT][hapmap] |
rs7804731 | 0.80[ASN][1000 genomes] |
rs7805192 | 0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes] |
rs975791 | 0.90[JPT][hapmap];0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1016416 | chr7:33241443-33559477 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
2 | nsv830944 | chr7:33389892-33549882 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv933237 | chr7:33470390-33574046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv933018 | chr7:33506325-33707270 | Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv830945 | chr7:33526648-33670592 | Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:33510800-33533200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
2 | chr7:33516400-33530800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
3 | chr7:33520000-33534800 | Weak transcription | Aorta | Aorta |
4 | chr7:33526400-33531400 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
5 | chr7:33526600-33530600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
6 | chr7:33527400-33533600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
7 | chr7:33527400-33534800 | Weak transcription | Psoas Muscle | Psoas |