Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10225698	0.85[ASN][1000 genomes]
rs10464226	0.83[ASN][1000 genomes]
rs11972278	0.83[ASN][1000 genomes]
rs12665869	0.85[ASN][1000 genomes]
rs12669595	0.87[ASN][1000 genomes]
rs1345277	0.86[ASN][1000 genomes]
rs1419903	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1419921	0.86[ASN][1000 genomes]
rs1419927	0.85[ASN][1000 genomes]
rs1473155	0.86[ASN][1000 genomes]
rs2041419	0.87[ASN][1000 genomes]
rs2392234	0.86[ASN][1000 genomes]
rs2893469	0.80[ASN][1000 genomes]
rs4637716	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4720118	0.83[ASN][1000 genomes]
rs4723288	0.87[ASN][1000 genomes]
rs6462477	0.84[ASN][1000 genomes]
rs6958002	0.83[ASN][1000 genomes]
rs6964756	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs723300	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs758779	0.85[ASN][1000 genomes]
rs758780	0.85[ASN][1000 genomes]
rs7798984	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7804731	0.85[ASN][1000 genomes]
rs7805192	0.85[ASN][1000 genomes]
rs975791	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33510800-33533200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:33520000-33534800	Weak transcription	Aorta	Aorta
3	chr7:33527400-33533600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:33527400-33534800	Weak transcription	Psoas Muscle	Psoas
5	chr7:33530200-33534800	Weak transcription	Left Ventricle	heart
6	chr7:33530400-33534400	Weak transcription	NH-A	brain
7	chr7:33530600-33532000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:33530600-33532200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:33530600-33535200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:33530800-33535400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:33531200-33532000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:33531200-33532000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:33531400-33532200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr7:33531400-33535800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:33531600-33535800	Enhancers	H1 Cell Line	embryonic stem cell

Quick Search: