Variant report

Variant	rs2392234
Chromosome Location	chr7:33497982-33497983
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10225698	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10230133	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10247780	0.86[ASN][1000 genomes]
rs10256994	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10464226	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11972278	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12665869	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12669218	0.81[ASN][1000 genomes]
rs12669595	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12671213	0.81[ASN][1000 genomes]
rs13241465	0.81[ASN][1000 genomes]
rs1345277	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362228	0.81[ASN][1000 genomes]
rs1362229	0.81[ASN][1000 genomes]
rs1362230	0.81[ASN][1000 genomes]
rs1419903	0.89[ASN][1000 genomes]
rs1419919	0.80[ASN][1000 genomes]
rs1419921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419927	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419928	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1473155	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2041419	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2392233	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2392235	0.87[AFR][1000 genomes]
rs4141012	0.81[ASN][1000 genomes]
rs4236336	0.81[ASN][1000 genomes]
rs4236337	0.80[ASN][1000 genomes]
rs4510745	0.82[ASN][1000 genomes]
rs4637716	0.90[ASN][1000 genomes]
rs4720118	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4723283	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4723285	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4723288	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58961617	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59532834	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6462477	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6462479	0.81[ASN][1000 genomes]
rs6958002	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6964756	0.82[ASN][1000 genomes]
rs6977009	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs723300	0.86[ASN][1000 genomes]
rs758779	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs758780	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781641	0.81[ASN][1000 genomes]
rs7798984	0.87[ASN][1000 genomes]
rs7802888	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7804731	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7805192	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs975791	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9886232	0.88[AFR][1000 genomes]
rs9886325	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv934287	chr7:33470390-33512880	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33475400-33516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:33493000-33502800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:33493200-33498600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:33493200-33498600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:33493200-33498600	Weak transcription	Osteobl	bone
6	chr7:33496600-33499400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:33497600-33499200	Enhancers	Brain Germinal Matrix	brain
8	chr7:33497600-33499200	Enhancers	Fetal Lung	lung

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