Variant report

Variant	rs10256994
Chromosome Location	chr7:33368660-33368661
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10225698	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10230133	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10464226	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11972278	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12665869	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12669595	0.85[ASN][1000 genomes]
rs1345277	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419921	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1419927	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1419928	0.84[ASN][1000 genomes]
rs1473155	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2041419	0.85[ASN][1000 genomes]
rs2392233	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2392234	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4720118	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4723283	0.84[ASN][1000 genomes]
rs4723285	0.85[ASN][1000 genomes]
rs4723288	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58961617	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59532834	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6462477	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6958002	0.89[ASN][1000 genomes]
rs6977009	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs758779	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs758780	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7802888	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7804731	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7805192	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs975791	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33364400-33370400	Weak transcription	Fetal Stomach	stomach
5	chr7:33366600-33384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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