Variant report

Variant	rs6977009
Chromosome Location	chr7:33374005-33374006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33374003..33374685-chr7:33972197..33973188,2	MCF-7	breast:
2	chr7:33373710..33374867-chr7:33498631..33499702,4	MCF-7	breast:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1008582	0.90[CHB][hapmap]
rs10225698	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10230133	0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10256994	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10268074	0.83[CHD][hapmap]
rs1030029	0.80[CHD][hapmap]
rs10464226	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10951383	0.83[CHD][hapmap]
rs11972278	0.95[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537278	0.83[CHD][hapmap]
rs12665869	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12669595	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13241465	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs1345277	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1362228	0.85[CHB][hapmap]
rs1362230	0.85[CHB][hapmap]
rs1419898	0.90[CHB][hapmap];0.93[CHD][hapmap]
rs1419900	0.87[CHD][hapmap]
rs1419916	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs1419918	0.85[CHB][hapmap]
rs1419919	0.85[CHB][hapmap];0.88[CHD][hapmap]
rs1419921	0.89[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1419925	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs1419927	0.90[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1419928	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1473155	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1592465	0.83[CHD][hapmap]
rs1894810	0.90[CHD][hapmap]
rs2024430	0.82[CHD][hapmap]
rs2041419	0.89[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2392233	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2392234	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3884597	0.84[TSI][hapmap]
rs4141012	0.85[CHB][hapmap]
rs4236337	0.85[CHB][hapmap];0.90[CHD][hapmap]
rs4509212	0.85[CHB][hapmap];0.85[CHD][hapmap]
rs4510745	0.85[CHB][hapmap]
rs4582453	0.90[CHD][hapmap]
rs4637716	0.95[CHD][hapmap];0.86[JPT][hapmap]
rs4720115	0.80[CHD][hapmap]
rs4720118	0.94[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4723283	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4723285	0.93[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4723288	0.90[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58961617	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59532834	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462477	0.90[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6462479	0.83[CHB][hapmap]
rs6958002	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6964756	0.86[JPT][hapmap]
rs6976311	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs6976753	0.81[ASN][1000 genomes]
rs721533	0.80[CHD][hapmap]
rs721851	0.90[CHD][hapmap]
rs723300	0.90[JPT][hapmap]
rs726463	0.90[CHD][hapmap]
rs758779	0.90[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs758780	0.90[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7802888	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7804731	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7805192	0.89[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs964707	0.80[CHD][hapmap]
rs975791	0.84[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9784973	0.85[TSI][hapmap]
rs986553	0.80[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33355200-33419600	Weak transcription	Primary T cells from cord blood	blood
2	chr7:33362200-33404400	Weak transcription	Ovary	ovary
3	chr7:33362200-33404800	Weak transcription	Fetal Lung	lung
4	chr7:33366600-33384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:33370600-33396200	Weak transcription	Adipose Nuclei	Adipose

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