Variant report

Variant	rs9886325
Chromosome Location	chr7:33503528-33503529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10235388	0.85[ASN][1000 genomes]
rs12530700	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12536596	0.82[EUR][1000 genomes]
rs12536844	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12537512	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs12538649	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12669595	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1345277	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1419912	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs1419921	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1473155	0.94[AFR][1000 genomes]
rs17724206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs17725673	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17726934	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs2041419	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2392234	0.94[AFR][1000 genomes]
rs2392235	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2392242	0.82[JPT][hapmap]
rs3948651	0.85[ASN][1000 genomes]
rs4720119	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723288	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs62451190	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62451222	0.81[ASN][1000 genomes]
rs62451225	0.81[ASN][1000 genomes]
rs6462477	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs6946608	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs758779	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs758780	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9886232	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv934287	chr7:33470390-33512880	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33475400-33516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:33502400-33504000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:33503000-33505200	Weak transcription	Fetal Lung	lung

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