Variant report

Variant	rs4720119
Chromosome Location	chr7:33499330-33499331
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:33373710..33374867-chr7:33498631..33499702,4	MCF-7	breast:
2	chr7:33225084..33225594-chr7:33499029..33499648,2	MCF-7	breast:
3	chr7:33499224..33499840-chr7:33756036..33756556,2	MCF-7	breast:
4	chr7:33282661..33283550-chr7:33499199..33499750,2	MCF-7	breast:
5	chr7:33498720..33499554-chr7:33783613..33784456,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10235388	0.85[ASN][1000 genomes]
rs10251775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12155002	0.84[ASN][1000 genomes]
rs12530700	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12536596	0.84[ASN][1000 genomes]
rs12536844	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs12537512	1.00[JPT][hapmap]
rs12538649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1419912	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[ASN][1000 genomes]
rs17724206	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17725673	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17726934	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1978333	0.81[ASN][1000 genomes]
rs2392235	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2392242	0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs28789535	0.84[ASN][1000 genomes]
rs3948651	0.85[ASN][1000 genomes]
rs62451190	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62451222	0.88[ASN][1000 genomes]
rs62451225	0.88[ASN][1000 genomes]
rs6946608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9886232	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886325	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv934287	chr7:33470390-33512880	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33475400-33516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:33493000-33502800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:33496600-33499400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:33498000-33499400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:33498400-33499400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:33498400-33499400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:33498600-33499400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:33498600-33499400	Enhancers	Brain Angular Gyrus	brain
9	chr7:33498600-33499400	Enhancers	HSMMtube	muscle
10	chr7:33498800-33499600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:33499000-33499400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:33499000-33502800	Weak transcription	Brain Substantia Nigra	brain
13	chr7:33499200-33499400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:33499200-33499400	Active TSS	Osteobl	bone
15	chr7:33499200-33502400	Weak transcription	Fetal Lung	lung

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