Variant report

Variant	rs62451225
Chromosome Location	chr7:33540725-33540726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33535469..33537729-chr7:33538223..33540733,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10235388	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12530700	0.81[ASN][1000 genomes]
rs12536844	0.92[ASN][1000 genomes]
rs1419912	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17725673	0.88[ASN][1000 genomes]
rs17726934	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2392235	0.88[ASN][1000 genomes]
rs2392242	0.92[ASN][1000 genomes]
rs3948651	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4720119	0.88[ASN][1000 genomes]
rs62451190	0.81[ASN][1000 genomes]
rs62451221	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62451222	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886232	0.85[ASN][1000 genomes]
rs9886325	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33533800-33543800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:33534200-33552400	Weak transcription	Pancreas	Pancrea
3	chr7:33535000-33541000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr7:33535200-33542000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:33535400-33547200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr7:33536400-33543600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:33536800-33540800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr7:33536800-33546000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:33537000-33552200	Weak transcription	Aorta	Aorta
10	chr7:33538800-33541600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr7:33540000-33540800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:33540000-33540800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:33540000-33540800	Enhancers	Left Ventricle	heart
14	chr7:33540000-33540800	Enhancers	Osteobl	bone
15	chr7:33540000-33541200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:33540000-33541200	Enhancers	Right Atrium	heart
17	chr7:33540000-33541200	Enhancers	NHDF-Ad	bronchial
18	chr7:33540000-33541400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:33540000-33541400	Enhancers	Fetal Lung	lung
20	chr7:33540000-33541400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:33540000-33541400	Enhancers	HSMM	muscle
22	chr7:33540000-33541400	Enhancers	HSMMtube	muscle
23	chr7:33540000-33541600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:33540000-33541600	Enhancers	Psoas Muscle	Psoas
25	chr7:33540000-33544400	Enhancers	Fetal Muscle Leg	muscle
26	chr7:33540200-33541200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:33540200-33541400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:33540200-33541400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:33540400-33541000	Enhancers	Colon Smooth Muscle	Colon
30	chr7:33540400-33541200	Enhancers	Fetal Stomach	stomach
31	chr7:33540400-33543200	Enhancers	Brain Substantia Nigra	brain
32	chr7:33540600-33540800	Enhancers	Brain Cingulate Gyrus	brain
33	chr7:33540600-33540800	Enhancers	Brain Hippocampus Middle	brain
34	chr7:33540600-33543200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links