Variant report

Variant	rs10251775
Chromosome Location	chr7:33301073-33301074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33299351..33301852-chr7:33302490..33303993,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10225173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10228486	0.84[EUR][1000 genomes]
rs10262453	1.00[CHB][hapmap]
rs10272438	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12155002	0.84[ASN][1000 genomes]
rs12530700	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12534242	1.00[CHB][hapmap]
rs12536300	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12536596	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12537512	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1420153	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420154	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1590140	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs17396870	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17724206	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17725673	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1978333	0.81[ASN][1000 genomes]
rs1983511	0.81[AMR][1000 genomes]
rs28789535	0.84[ASN][1000 genomes]
rs3843532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4720119	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6946608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6979640	1.00[CHB][hapmap]
rs7789007	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9768604	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33283800-33316000	Weak transcription	Ovary	ovary
2	chr7:33288800-33317600	Weak transcription	Gastric	stomach
3	chr7:33289400-33309000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:33289600-33310800	Weak transcription	Psoas Muscle	Psoas
5	chr7:33290000-33316200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:33290800-33309000	Weak transcription	Fetal Stomach	stomach
7	chr7:33290800-33316400	Weak transcription	Aorta	Aorta
8	chr7:33291200-33316000	Weak transcription	Primary T cells from cord blood	blood
9	chr7:33291600-33305200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:33291800-33307600	Weak transcription	Left Ventricle	heart
11	chr7:33293400-33302200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:33297400-33310800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:33298200-33301200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:33298600-33301400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:33298800-33301400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:33298800-33302200	Weak transcription	NHDF-Ad	bronchial
17	chr7:33300000-33301600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:33300200-33301800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:33300400-33301200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr7:33300400-33309800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr7:33300600-33302600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:33300600-33303000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr7:33300800-33301200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:33300800-33301600	Enhancers	Osteobl	bone
25	chr7:33300800-33302200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr7:33300800-33302200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:33300800-33302400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr7:33300800-33302600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr7:33301000-33301400	Enhancers	Brain Anterior Caudate	brain
30	chr7:33301000-33301800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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