Variant report

Variant	rs17396870
Chromosome Location	chr7:33277781-33277782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10225173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10228486	0.91[ASN][1000 genomes]
rs10251775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10254116	0.85[EUR][1000 genomes]
rs10260015	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10262453	1.00[CHB][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10262890	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10271927	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272438	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12155002	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12530700	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12534242	1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12536300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12537512	1.00[JPT][hapmap]
rs12537875	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12538649	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1345306	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1420152	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1420154	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1590140	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17724206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1978333	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28435377	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28789535	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3843532	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4720113	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4720114	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4723276	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62449325	0.85[AMR][1000 genomes]
rs6946608	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6947352	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6979640	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7785463	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9768604	1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33273800-33283800	Weak transcription	Fetal Lung	lung
2	chr7:33276800-33277800	Enhancers	Brain Anterior Caudate	brain
3	chr7:33276800-33277800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:33276800-33277800	Enhancers	Brain Substantia Nigra	brain
5	chr7:33277000-33277800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:33277000-33277800	Enhancers	Liver	Liver
7	chr7:33277000-33278000	Enhancers	HepG2	liver
8	chr7:33277200-33277800	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:33277200-33281800	Weak transcription	Stomach Mucosa	stomach
10	chr7:33277200-33282800	Weak transcription	Brain Angular Gyrus	brain

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