Variant report

Variant	rs6947352
Chromosome Location	chr7:33262550-33262551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10225173	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10228486	0.91[ASN][1000 genomes]
rs10254116	0.86[EUR][1000 genomes]
rs10260015	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10262453	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10262890	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10271927	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10272438	0.83[ASN][1000 genomes]
rs12155002	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12534242	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536300	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12537875	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12538649	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1345306	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1420152	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1420154	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17396870	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1978333	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28435377	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28789535	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4720113	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4720114	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4723276	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62449325	0.83[AMR][1000 genomes]
rs6946608	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6979640	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7785463	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7789007	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9768604	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33251400-33265400	Weak transcription	Gastric	stomach
2	chr7:33252400-33263200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr7:33252800-33266400	Weak transcription	Left Ventricle	heart
4	chr7:33253600-33263400	Weak transcription	Primary T cells from cord blood	blood
5	chr7:33262200-33263200	Weak transcription	Ovary	ovary

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