Variant report
| Variant | rs7798984 |
|---|---|
| Chromosome Location | chr7:33517804-33517805 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10225698 | 0.86[ASN][1000 genomes] |
| rs10247780 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10464226 | 0.83[ASN][1000 genomes] |
| rs11972278 | 0.83[ASN][1000 genomes] |
| rs12665869 | 0.86[ASN][1000 genomes] |
| rs12669595 | 0.88[ASN][1000 genomes] |
| rs1345277 | 0.87[ASN][1000 genomes] |
| rs1419900 | 0.80[ASN][1000 genomes] |
| rs1419903 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1419921 | 0.87[ASN][1000 genomes] |
| rs1419927 | 0.86[ASN][1000 genomes] |
| rs1473155 | 0.87[ASN][1000 genomes] |
| rs1968131 | 0.80[ASN][1000 genomes] |
| rs2041419 | 0.88[ASN][1000 genomes] |
| rs2392234 | 0.87[ASN][1000 genomes] |
| rs4637716 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4720118 | 0.84[ASN][1000 genomes] |
| rs4723288 | 0.88[ASN][1000 genomes] |
| rs6462477 | 0.85[ASN][1000 genomes] |
| rs6462482 | 0.80[ASN][1000 genomes] |
| rs6958002 | 0.83[ASN][1000 genomes] |
| rs6964756 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs723300 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs726463 | 0.80[ASN][1000 genomes] |
| rs726464 | 0.80[ASN][1000 genomes] |
| rs758779 | 0.86[ASN][1000 genomes] |
| rs758780 | 0.86[ASN][1000 genomes] |
| rs7786748 | 0.80[ASN][1000 genomes] |
| rs7804723 | 0.80[ASN][1000 genomes] |
| rs7804731 | 0.86[ASN][1000 genomes] |
| rs7805192 | 0.86[ASN][1000 genomes] |
| rs975791 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016416 | chr7:33241443-33559477 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv830944 | chr7:33389892-33549882 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv933237 | chr7:33470390-33574046 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv933018 | chr7:33506325-33707270 | Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:33510800-33533200 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 2 | chr7:33516400-33530800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 3 | chr7:33516800-33518200 | Enhancers | GM12878-XiMat | blood |
