Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10225698	0.87[ASN][1000 genomes]
rs10247780	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10464226	0.85[ASN][1000 genomes]
rs11972278	0.85[ASN][1000 genomes]
rs12665869	0.87[ASN][1000 genomes]
rs12669595	0.89[ASN][1000 genomes]
rs1345277	0.89[ASN][1000 genomes]
rs1419921	0.89[ASN][1000 genomes]
rs1419927	0.87[ASN][1000 genomes]
rs1473155	0.89[ASN][1000 genomes]
rs2041419	0.89[ASN][1000 genomes]
rs2392233	0.81[ASN][1000 genomes]
rs2392234	0.89[ASN][1000 genomes]
rs4637716	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4720118	0.85[ASN][1000 genomes]
rs4723285	0.81[ASN][1000 genomes]
rs4723288	0.89[ASN][1000 genomes]
rs6462477	0.86[ASN][1000 genomes]
rs6958002	0.85[ASN][1000 genomes]
rs6964756	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs723300	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs758779	0.87[ASN][1000 genomes]
rs758780	0.87[ASN][1000 genomes]
rs7798984	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7804731	0.87[ASN][1000 genomes]
rs7805192	0.87[ASN][1000 genomes]
rs975791	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830944	chr7:33389892-33549882	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv520794	chr7:33506906-33517523	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33475400-33516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:33510800-33533200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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