Variant report

Variant	rs10257361
Chromosome Location	chr7:33193314-33193315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1009355	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10230133	0.83[CHB][hapmap]
rs10250045	0.94[CHB][hapmap]
rs10268074	0.94[CHB][hapmap]
rs10279081	0.94[CHB][hapmap]
rs1030029	1.00[CHB][hapmap]
rs10951383	0.94[CHB][hapmap]
rs11763098	0.85[ASN][1000 genomes]
rs12155105	0.93[CHB][hapmap]
rs12537278	0.94[CHB][hapmap]
rs12666022	0.83[ASN][1000 genomes]
rs12671191	0.94[CHB][hapmap]
rs1345308	0.94[CHB][hapmap]
rs1362368	0.84[JPT][hapmap]
rs1362371	0.94[CHB][hapmap]
rs1420148	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1420158	0.94[CHB][hapmap]
rs1420159	0.94[CHB][hapmap]
rs1548880	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1592465	0.88[CHB][hapmap]
rs1894873	0.94[CHB][hapmap]
rs2006387	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2024430	0.94[CHB][hapmap]
rs4720115	0.94[CHB][hapmap]
rs4723261	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs4723263	0.89[JPT][hapmap]
rs4723265	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4723272	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4723273	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6462467	0.94[CHB][hapmap]
rs6950434	1.00[CHB][hapmap]
rs6960483	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6968400	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6975008	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6976311	0.84[CHB][hapmap]
rs721533	1.00[CHB][hapmap]
rs759396	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs764041	0.93[CHB][hapmap]
rs7776834	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7778657	0.94[CHB][hapmap]
rs7779367	0.94[CHB][hapmap]
rs7780194	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs7781187	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7783610	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7791710	1.00[CHB][hapmap]
rs7793759	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7802888	0.83[CHB][hapmap]
rs964707	1.00[CHB][hapmap]
rs986553	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029220	chr7:32921484-33262190	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv830942	chr7:33048075-33246735	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv869720	chr7:33127192-33193580	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv606609	chr7:33131729-33196354	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	nsv933792	chr7:33169693-33216984	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv933960	chr7:33192013-33195135	Weak transcription Enhancers Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
8	nsv932921	chr7:33192168-33195135	Strong transcription Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33170200-33205800	Weak transcription	Aorta	Aorta
2	chr7:33171200-33196200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:33171200-33205800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr7:33171200-33206600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:33176400-33206000	Weak transcription	Liver	Liver
6	chr7:33179600-33195000	Weak transcription	Fetal Brain Male	brain
7	chr7:33182400-33210200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:33182800-33205600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:33184600-33205800	Weak transcription	Fetal Lung	lung
10	chr7:33184800-33217200	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:33185000-33205800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:33185200-33196200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:33185400-33196400	Weak transcription	Brain Substantia Nigra	brain
14	chr7:33185400-33196800	Weak transcription	Brain Anterior Caudate	brain
15	chr7:33185400-33218000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:33185600-33205600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr7:33185600-33224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:33187000-33196400	Weak transcription	Adipose Nuclei	Adipose
19	chr7:33189000-33197200	Weak transcription	HSMMtube	muscle
20	chr7:33189200-33206800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr7:33190000-33217600	Weak transcription	Left Ventricle	heart
22	chr7:33190200-33230400	Weak transcription	Gastric	stomach
23	chr7:33190400-33197400	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:33190800-33194800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:33191200-33193600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:33191400-33205800	Weak transcription	Fetal Intestine Large	intestine
27	chr7:33191600-33205800	Weak transcription	Fetal Muscle Trunk	muscle
28	chr7:33191800-33196600	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:33191800-33199600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:33192000-33197400	Weak transcription	Fetal Heart	heart
31	chr7:33192000-33205600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr7:33192200-33195600	Weak transcription	Fetal Kidney	kidney
33	chr7:33192200-33199800	Weak transcription	Primary B cells from cord blood	blood
34	chr7:33192400-33195800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr7:33192600-33205000	Weak transcription	Fetal Stomach	stomach
36	chr7:33192800-33195200	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr7:33192800-33196000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:33193000-33193600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:33193000-33193800	Enhancers	Osteobl	bone
40	chr7:33193000-33196600	Weak transcription	Small Intestine	intestine
41	chr7:33193000-33205600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:33193200-33194600	Strong transcription	Ovary	ovary
43	chr7:33193200-33195000	Enhancers	NHDF-Ad	bronchial
44	chr7:33193200-33197600	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links