Variant report

Variant	rs1833716
Chromosome Location	chr5:114819995-114819996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10035674	0.95[EUR][1000 genomes]
rs10037534	0.94[EUR][1000 genomes]
rs10478233	0.93[EUR][1000 genomes]
rs10478234	0.95[EUR][1000 genomes]
rs12153505	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13189995	0.95[EUR][1000 genomes]
rs17137847	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs269522	0.85[EUR][1000 genomes]
rs28650823	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2900095	0.81[EUR][1000 genomes]
rs56402249	0.94[EUR][1000 genomes]
rs7735894	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv830455	chr5:114761542-114938284	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1032234	chr5:114785557-114911527	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1833716	COMMD10	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114816200-114820200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:114816400-114822200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:114818600-114824200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:114819600-114820000	Enhancers	GM12878-XiMat	blood
5	chr5:114819600-114820200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr5:114819600-114820800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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