Variant report

Variant	rs7735894
Chromosome Location	chr5:114809360-114809361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10035674	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10037534	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478233	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10478234	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153505	0.95[EUR][1000 genomes]
rs13189995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17137847	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1833716	0.95[EUR][1000 genomes]
rs269522	0.82[EUR][1000 genomes]
rs28650823	0.95[EUR][1000 genomes]
rs2900095	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56402249	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv830455	chr5:114761542-114938284	Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1032234	chr5:114785557-114911527	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114805400-114809800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr5:114805400-114810200	Enhancers	Fetal Muscle Leg	muscle
3	chr5:114805800-114810400	Enhancers	Fetal Brain Male	brain
4	chr5:114806800-114809600	Enhancers	Brain Germinal Matrix	brain
5	chr5:114807000-114809400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:114807600-114809800	Enhancers	Fetal Heart	heart
7	chr5:114807600-114812000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:114808800-114809600	Weak transcription	Psoas Muscle	Psoas
9	chr5:114808800-114809800	Weak transcription	Fetal Lung	lung
10	chr5:114808800-114813000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:114809000-114809400	Weak transcription	Fetal Brain Female	brain
12	chr5:114809000-114810400	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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