Variant report

Variant	rs183385101
Chromosome Location	chr6:33250418-33250419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:33250238-33250657	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:33250072-33250627	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33248031..33250805-chr6:33381162..33383303,2	MCF-7	breast:
2	chr6:33244680..33251060-chr6:33375427..33382644,12	MCF-7	breast:

Variant related genes	Relation type
WDR46	TF binding region
ENSG00000112511	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462893	chr6:33142539-33256471	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv602830	chr6:33142539-33256471	Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
4	nsv462894	chr6:33174783-33254665	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
5	nsv602831	chr6:33174783-33254665	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
6	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
7	esv3475242	chr6:33248677-33250829	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
8	esv3475243	chr6:33248677-33250829	Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
9	esv9776	chr6:33249085-33250420	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33245600-33251400	Weak transcription	NHDF-Ad	bronchial
2	chr6:33245600-33255200	Strong transcription	NHEK	skin
3	chr6:33245600-33255400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:33245800-33254400	Weak transcription	Fetal Kidney	kidney
5	chr6:33245800-33255600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:33245800-33255800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:33245800-33255800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:33245800-33256000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:33245800-33256000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr6:33245800-33256400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr6:33246000-33251800	Weak transcription	Small Intestine	intestine
12	chr6:33246000-33252600	Weak transcription	Psoas Muscle	Psoas
13	chr6:33246000-33255200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:33246000-33255600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:33246000-33255600	Strong transcription	Fetal Intestine Large	intestine
16	chr6:33246000-33255800	Strong transcription	Fetal Stomach	stomach
17	chr6:33246000-33255800	Weak transcription	Right Atrium	heart
18	chr6:33246200-33251400	Strong transcription	Brain Cingulate Gyrus	brain
19	chr6:33246200-33252600	Strong transcription	Fetal Brain Female	brain
20	chr6:33246200-33253000	Strong transcription	Dnd41	blood
21	chr6:33246200-33255000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:33246200-33255800	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:33246200-33255800	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:33246200-33255800	Strong transcription	Brain Anterior Caudate	brain
25	chr6:33246400-33250800	Strong transcription	Colonic Mucosa	Colon
26	chr6:33246400-33255400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:33246400-33255400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:33246400-33255400	Strong transcription	Lung	lung
29	chr6:33246400-33255800	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:33246400-33255800	Strong transcription	Osteobl	bone
31	chr6:33246600-33251200	Strong transcription	Thymus	Thymus
32	chr6:33246600-33252200	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:33246600-33253400	Strong transcription	Brain Hippocampus Middle	brain
34	chr6:33246600-33255400	Strong transcription	HepG2	liver
35	chr6:33246600-33255600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr6:33246600-33255600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:33246600-33255600	Strong transcription	Liver	Liver
38	chr6:33246600-33255600	Strong transcription	Duodenum Mucosa	Duodenum
39	chr6:33246600-33255600	Weak transcription	Fetal Heart	heart
40	chr6:33246600-33255800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:33246800-33250600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:33246800-33255800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:33247000-33250600	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr6:33247000-33250600	Strong transcription	Brain Angular Gyrus	brain
45	chr6:33247000-33250600	Strong transcription	HSMM	muscle
46	chr6:33247000-33251400	Strong transcription	Ovary	ovary
47	chr6:33247000-33252200	Weak transcription	Fetal Brain Male	brain
48	chr6:33247200-33253200	Strong transcription	Gastric	stomach
49	chr6:33247200-33253400	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr6:33247200-33254200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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