Variant report

Variant	rs183464
Chromosome Location	chr6:39073052-39073053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:39065425..39068322-chr6:39071834..39073709,2	MCF-7	breast:
2	chr6:39071474..39074131-chr6:39080947..39082685,2	MCF-7	breast:
3	chr6:39071727..39073365-chr6:39081349..39083431,2	K562	blood:

Variant related genes	Relation type
ENSG00000112167	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10305514	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10305518	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2268637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs2268638	1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs57143316	0.97[ASN][1000 genomes]
rs61086156	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73734044	0.97[ASN][1000 genomes]
rs9918349	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39043400-39082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:39060400-39073200	Weak transcription	Fetal Heart	heart
3	chr6:39063800-39076400	Weak transcription	HepG2	liver
4	chr6:39064800-39076800	Weak transcription	Aorta	Aorta
5	chr6:39066800-39077200	Weak transcription	Brain Anterior Caudate	brain
6	chr6:39068200-39082000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:39068400-39075600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:39068600-39077200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:39068600-39078400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:39068800-39077800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:39068800-39078200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:39069200-39076800	Weak transcription	Spleen	Spleen
13	chr6:39069400-39076800	Weak transcription	HSMMtube	muscle
14	chr6:39069400-39077600	Weak transcription	HMEC	breast
15	chr6:39069800-39073800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:39069800-39081800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:39070000-39077200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:39070200-39073600	Strong transcription	Thymus	Thymus
19	chr6:39070200-39073800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:39070200-39076400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:39070200-39076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:39070200-39076600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:39070200-39078200	Weak transcription	K562	blood
24	chr6:39070200-39081600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr6:39070200-39081600	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:39070200-39081800	Weak transcription	NH-A	brain
27	chr6:39070400-39075000	Weak transcription	Brain Substantia Nigra	brain
28	chr6:39070400-39076800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:39070400-39077400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:39070400-39081800	Weak transcription	HUVEC	blood vessel
31	chr6:39070600-39073600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:39070600-39073600	Strong transcription	Fetal Intestine Large	intestine
33	chr6:39070600-39073600	Strong transcription	Dnd41	blood
34	chr6:39070600-39073800	Strong transcription	Primary B cells from cord blood	blood
35	chr6:39070600-39073800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:39070600-39075200	Strong transcription	Fetal Muscle Leg	muscle
37	chr6:39070600-39077400	Weak transcription	HSMM	muscle
38	chr6:39070800-39081400	Weak transcription	Osteobl	bone
39	chr6:39070800-39082000	Weak transcription	NHLF	lung
40	chr6:39071000-39073600	Strong transcription	Fetal Stomach	stomach
41	chr6:39071000-39073800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:39071000-39078600	Strong transcription	Primary T cells from cord blood	blood
43	chr6:39071200-39073200	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:39071200-39073600	Strong transcription	Primary B cells from peripheral blood	blood
45	chr6:39071200-39073600	Strong transcription	Psoas Muscle	Psoas
46	chr6:39071200-39081400	Weak transcription	NHEK	skin
47	chr6:39071200-39082000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr6:39071400-39073800	Strong transcription	Brain Hippocampus Middle	brain
49	chr6:39071400-39073800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr6:39071400-39077600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links