Variant report

Variant	rs61086156
Chromosome Location	chr6:39059324-39059325
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38941129..38941714-chr6:39059120..39059717,2	MCF-7	breast:
2	chr6:38970479..38971603-chr6:39058514..39059664,3	K562	blood:
3	chr6:39054886..39057587-chr6:39057914..39060553,2	MCF-7	breast:
4	chr6:39056771..39059349-chr6:39083061..39085112,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10305514	0.86[ASN][1000 genomes]
rs10305518	0.86[ASN][1000 genomes]
rs183464	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2268637	0.90[ASN][1000 genomes]
rs2268638	0.87[ASN][1000 genomes]
rs57143316	0.98[ASN][1000 genomes]
rs73734044	0.98[ASN][1000 genomes]
rs9918349	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028088	chr6:38821047-39163549	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538205	chr6:38821047-39163549	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv528286	chr6:39019503-39060478	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1031922	chr6:39034484-39060762	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv462919	chr6:39050384-39062990	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv602963	chr6:39050384-39062990	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:39021200-39072000	Weak transcription	Gastric	stomach
2	chr6:39027400-39073000	Weak transcription	Pancreas	Pancrea
3	chr6:39043400-39082000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:39052600-39060400	Enhancers	Fetal Heart	heart
5	chr6:39053000-39072400	Weak transcription	Brain Germinal Matrix	brain
6	chr6:39053400-39059600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:39055200-39069800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:39055600-39060800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:39056800-39059600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:39057200-39059600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:39057200-39060000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:39057400-39059800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:39057400-39060800	Weak transcription	Fetal Lung	lung
14	chr6:39057600-39059600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:39057800-39059800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:39058000-39068200	Weak transcription	Thymus	Thymus
17	chr6:39058200-39059600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:39058400-39071200	Weak transcription	Psoas Muscle	Psoas
19	chr6:39058400-39072000	Weak transcription	Left Ventricle	heart
20	chr6:39058400-39072600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:39058400-39073000	Weak transcription	Lung	lung
22	chr6:39059000-39060200	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr6:39059200-39059400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links