Variant report

Variant	rs1836406
Chromosome Location	chr9:98542044-98542045
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98540410..98542743-chr9:98568688..98571195,2	MCF-7	breast:
2	chr9:98540353..98542848-chr9:98564326..98568031,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1344352	0.84[MKK][hapmap]
rs4743306	0.92[ASW][hapmap]
rs7029459	0.84[ASW][hapmap];0.96[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98535400-98550800	Weak transcription	Right Atrium	heart
2	chr9:98535600-98545800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:98536000-98546800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr9:98538600-98543800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:98540000-98542400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:98540800-98542600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:98541200-98542600	Enhancers	Ovary	ovary
8	chr9:98541400-98543200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:98541400-98545800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:98541600-98542200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:98541600-98543000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:98541600-98545000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:98541800-98543200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:98541800-98545800	Weak transcription	HSMMtube	muscle
15	chr9:98541800-98545800	Weak transcription	NHLF	lung
16	chr9:98542000-98543600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr9:98542000-98544800	Weak transcription	HepG2	liver
18	chr9:98542000-98545000	Weak transcription	HSMM	muscle
19	chr9:98542000-98545200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:98542000-98545800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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