Variant report

Variant	rs1837604
Chromosome Location	chr11:15861538-15861539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs67677040	0.82[AMR][1000 genomes]
rs7124200	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15853000-15866600	Weak transcription	Left Ventricle	heart
2	chr11:15854200-15866600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:15858000-15865000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr11:15858800-15865200	Weak transcription	Psoas Muscle	Psoas
5	chr11:15860000-15862000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:15860600-15861600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:15860600-15862800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:15860800-15868000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr11:15861000-15862600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:15861000-15862800	Weak transcription	Fetal Intestine Small	intestine
11	chr11:15861000-15862800	Weak transcription	Fetal Lung	lung
12	chr11:15861000-15864800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:15861200-15862600	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:15861400-15861800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:15861400-15862200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:15861400-15862600	Weak transcription	Fetal Intestine Large	intestine
17	chr11:15861400-15862600	Weak transcription	Small Intestine	intestine
18	chr11:15861400-15863400	Weak transcription	Brain Germinal Matrix	brain
19	chr11:15861400-15864400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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