Variant report

Variant	rs67677040
Chromosome Location	chr11:15848869-15848870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15848101..15848993-chr11:16634904..16635824,3	K562	blood:
2	chr11:15847163..15849862-chr11:15922675..15924255,2	MCF-7	breast:
3	chr11:15845677..15847198-chr11:15848084..15850314,2	K562	blood:
4	chr11:15671103..15671780-chr11:15848509..15849081,2	MCF-7	breast:
5	chr11:15846564..15849425-chr11:16633366..16635288,2	K562	blood:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11821667	1.00[EUR][1000 genomes]
rs11821691	1.00[EUR][1000 genomes]
rs1837604	0.82[AMR][1000 genomes]
rs6486264	1.00[EUR][1000 genomes]
rs6486265	1.00[EUR][1000 genomes]
rs7112764	1.00[EUR][1000 genomes]
rs7113024	1.00[EUR][1000 genomes]
rs7118162	0.91[AFR][1000 genomes]
rs72860688	1.00[EUR][1000 genomes]
rs72860691	1.00[EUR][1000 genomes]
rs72862108	1.00[EUR][1000 genomes]
rs72862120	1.00[EUR][1000 genomes]
rs72862126	1.00[EUR][1000 genomes]
rs72862149	1.00[EUR][1000 genomes]
rs72862152	1.00[EUR][1000 genomes]
rs72862154	1.00[EUR][1000 genomes]
rs72862159	1.00[EUR][1000 genomes]
rs73428910	1.00[EUR][1000 genomes]
rs7945894	1.00[EUR][1000 genomes]
rs7946754	1.00[EUR][1000 genomes]
rs7947977	0.93[EUR][1000 genomes]
rs7948085	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15839400-15850200	Weak transcription	Aorta	Aorta
2	chr11:15841800-15849200	Weak transcription	Adipose Nuclei	Adipose
3	chr11:15841800-15849600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:15846600-15849000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:15847200-15850600	Enhancers	Brain Germinal Matrix	brain
6	chr11:15847400-15852200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:15847400-15853800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr11:15848000-15850600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:15848000-15852800	Enhancers	Brain Hippocampus Middle	brain
10	chr11:15848000-15853400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:15848200-15849200	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:15848200-15850000	Weak transcription	Pancreas	Pancrea
13	chr11:15848200-15850600	Enhancers	Brain Substantia Nigra	brain
14	chr11:15848400-15849200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:15848400-15849800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:15848400-15852400	Weak transcription	NH-A	brain
17	chr11:15848400-15853000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:15848600-15849800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:15848600-15850200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:15848600-15850600	Enhancers	Brain Cingulate Gyrus	brain
21	chr11:15848600-15852600	Enhancers	Fetal Lung	lung
22	chr11:15848800-15849200	Weak transcription	Right Atrium	heart
23	chr11:15848800-15850000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:15848800-15850000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:15848800-15851600	Weak transcription	Lung	lung
26	chr11:15848800-15852000	Weak transcription	Left Ventricle	heart
27	chr11:15848800-15857600	Weak transcription	Fetal Muscle Trunk	muscle

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