Variant report

Variant	rs72860688
Chromosome Location	chr11:15841167-15841168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15792043..15792613-chr11:15841089..15841866,2	MCF-7	breast:
2	chr11:15839247..15841645-chr11:15844030..15847018,3	K562	blood:
3	chr11:15671338..15672254-chr11:15840920..15841521,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11821667	1.00[EUR][1000 genomes]
rs11821691	1.00[EUR][1000 genomes]
rs6486264	1.00[EUR][1000 genomes]
rs6486265	1.00[EUR][1000 genomes]
rs67677040	1.00[EUR][1000 genomes]
rs7112764	1.00[EUR][1000 genomes]
rs7113024	1.00[EUR][1000 genomes]
rs72860691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862126	1.00[EUR][1000 genomes]
rs72862149	1.00[EUR][1000 genomes]
rs72862152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862159	1.00[EUR][1000 genomes]
rs73428910	1.00[EUR][1000 genomes]
rs7945894	1.00[EUR][1000 genomes]
rs7946754	1.00[EUR][1000 genomes]
rs7947977	0.93[EUR][1000 genomes]
rs7948085	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15829800-15848000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15836600-15841800	Enhancers	Adipose Nuclei	Adipose
3	chr11:15837600-15841800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:15838000-15841400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:15838200-15841400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:15838400-15841200	Weak transcription	NHEK	skin
7	chr11:15838800-15841400	Weak transcription	Right Atrium	heart
8	chr11:15838800-15847000	Weak transcription	Pancreas	Pancrea
9	chr11:15838800-15848000	Weak transcription	Left Ventricle	heart
10	chr11:15839000-15841400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:15839000-15841400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr11:15839000-15841400	Weak transcription	HMEC	breast
13	chr11:15839000-15841600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:15839000-15843000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:15839000-15845000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:15839400-15841400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:15839400-15841800	Enhancers	Colon Smooth Muscle	Colon
18	chr11:15839400-15845000	Weak transcription	NH-A	brain
19	chr11:15839400-15850200	Weak transcription	Aorta	Aorta
20	chr11:15839600-15841200	Enhancers	Fetal Intestine Small	intestine
21	chr11:15839600-15841400	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr11:15839600-15841600	Enhancers	Fetal Intestine Large	intestine
23	chr11:15839800-15841200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:15839800-15841200	Enhancers	Small Intestine	intestine
25	chr11:15839800-15841800	Enhancers	Stomach Mucosa	stomach
26	chr11:15839800-15842000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr11:15839800-15845600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:15839800-15845600	Weak transcription	Osteobl	bone
29	chr11:15839800-15847400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:15840000-15841200	Weak transcription	Fetal Muscle Leg	muscle
31	chr11:15840000-15841800	Enhancers	Liver	Liver
32	chr11:15840200-15841400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr11:15840200-15841600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr11:15840200-15841600	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:15840400-15841200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr11:15840400-15842000	Enhancers	Brain Anterior Caudate	brain
37	chr11:15840600-15841600	Enhancers	Duodenum Mucosa	Duodenum
38	chr11:15840600-15841600	Enhancers	Right Ventricle	heart
39	chr11:15840600-15842000	Enhancers	Brain Hippocampus Middle	brain
40	chr11:15840800-15841400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr11:15840800-15841400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:15840800-15841400	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr11:15841000-15841400	Weak transcription	Brain Angular Gyrus	brain
44	chr11:15841000-15841400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:15841000-15842000	Enhancers	Brain Substantia Nigra	brain
46	chr11:15841000-15842000	Enhancers	Skeletal Muscle Female	skeletal muscle

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