Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11821667	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11821691	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6486264	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6486265	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67677040	1.00[EUR][1000 genomes]
rs7112764	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7124200	1.00[CEU][hapmap]
rs72860688	1.00[EUR][1000 genomes]
rs72860691	1.00[EUR][1000 genomes]
rs72862108	1.00[EUR][1000 genomes]
rs72862120	1.00[EUR][1000 genomes]
rs72862126	1.00[EUR][1000 genomes]
rs72862149	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862152	1.00[EUR][1000 genomes]
rs72862154	1.00[EUR][1000 genomes]
rs72862159	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73428910	1.00[EUR][1000 genomes]
rs7945894	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7946754	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947977	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7948085	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15850600-15860600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:15853000-15866600	Weak transcription	Left Ventricle	heart
3	chr11:15854200-15866600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:15857000-15858800	Enhancers	Colon Smooth Muscle	Colon
5	chr11:15857000-15858800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr11:15857200-15858800	Enhancers	Psoas Muscle	Psoas
7	chr11:15857200-15859200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:15857200-15860000	Enhancers	Fetal Muscle Leg	muscle
9	chr11:15857200-15860400	Enhancers	Duodenum Mucosa	Duodenum
10	chr11:15857200-15860400	Enhancers	Fetal Intestine Small	intestine
11	chr11:15857600-15859200	Enhancers	Small Intestine	intestine
12	chr11:15857600-15860000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:15857800-15860600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:15858000-15860600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr11:15858000-15865000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr11:15858400-15861400	Enhancers	Fetal Intestine Large	intestine

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