Variant report

Variant	rs72860691
Chromosome Location	chr11:15841861-15841862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15792043..15792613-chr11:15841089..15841866,2	MCF-7	breast:
2	chr11:15792503..15793055-chr11:15841188..15841874,2	K562	blood:
3	chr11:15841340..15841865-chr11:15904773..15905568,2	K562	blood:
4	chr11:15650817..15651581-chr11:15841314..15841899,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11821667	1.00[EUR][1000 genomes]
rs11821691	1.00[EUR][1000 genomes]
rs6486264	1.00[EUR][1000 genomes]
rs6486265	1.00[EUR][1000 genomes]
rs67677040	1.00[EUR][1000 genomes]
rs7112764	1.00[EUR][1000 genomes]
rs7113024	1.00[EUR][1000 genomes]
rs72860688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862126	1.00[EUR][1000 genomes]
rs72862149	1.00[EUR][1000 genomes]
rs72862152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862159	1.00[EUR][1000 genomes]
rs73428910	1.00[EUR][1000 genomes]
rs7945894	1.00[EUR][1000 genomes]
rs7946754	1.00[EUR][1000 genomes]
rs7947977	0.93[EUR][1000 genomes]
rs7948085	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832073	chr11:15822409-15984078	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15829800-15848000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15838800-15847000	Weak transcription	Pancreas	Pancrea
3	chr11:15838800-15848000	Weak transcription	Left Ventricle	heart
4	chr11:15839000-15843000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:15839000-15845000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:15839400-15845000	Weak transcription	NH-A	brain
7	chr11:15839400-15850200	Weak transcription	Aorta	Aorta
8	chr11:15839800-15842000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:15839800-15845600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:15839800-15845600	Weak transcription	Osteobl	bone
11	chr11:15839800-15847400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:15840400-15842000	Enhancers	Brain Anterior Caudate	brain
13	chr11:15840600-15842000	Enhancers	Brain Hippocampus Middle	brain
14	chr11:15841000-15842000	Enhancers	Brain Substantia Nigra	brain
15	chr11:15841000-15842000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:15841200-15842000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr11:15841400-15842000	Enhancers	Brain Angular Gyrus	brain
18	chr11:15841400-15842000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:15841400-15842800	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr11:15841600-15842000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:15841600-15842800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:15841600-15843000	Weak transcription	Right Ventricle	heart
23	chr11:15841600-15848600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:15841800-15848600	Weak transcription	Right Atrium	heart
25	chr11:15841800-15849200	Weak transcription	Adipose Nuclei	Adipose
26	chr11:15841800-15849600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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