Variant report

Variant	rs1838175
Chromosome Location	chr4:82024370-82024371
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17005053	0.88[ASN][1000 genomes]
rs72871754	0.88[ASN][1000 genomes]
rs9993765	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81998200-82030000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82006200-82024800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:82006800-82024800	Weak transcription	NHDF-Ad	bronchial
4	chr4:82013000-82033200	Weak transcription	NHLF	lung
5	chr4:82017600-82028600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:82019800-82025000	Weak transcription	Fetal Intestine Large	intestine
7	chr4:82021600-82029000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:82022400-82027400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:82022800-82027400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:82023200-82024600	Enhancers	Fetal Brain Male	brain
11	chr4:82024200-82025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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