Variant report

Variant	rs1838977
Chromosome Location	chr11:92652638-92652639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1014662	1.00[ASN][1000 genomes]
rs1052382	0.93[EUR][1000 genomes]
rs11598	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs16918260	0.94[ASN][1000 genomes]
rs16918269	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs17628334	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2028978	1.00[ASN][1000 genomes]
rs2028979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784576	0.94[ASN][1000 genomes]
rs55835347	0.87[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs55948438	0.94[ASN][1000 genomes]
rs56379016	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7479383	0.94[ASN][1000 genomes]
rs7479533	0.94[ASN][1000 genomes]
rs7483042	0.94[ASN][1000 genomes]
rs7950811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv898175	chr11:92623349-92668826	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92649800-92653000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr11:92650600-92652800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:92650600-92653200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr11:92651200-92653000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:92651400-92653400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:92651400-92655400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:92651800-92652800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:92651800-92653000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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