Variant report

Variant	rs55784576
Chromosome Location	chr11:92630438-92630439
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1014662	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16918260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17628334	1.00[ASN][1000 genomes]
rs1838977	0.94[ASN][1000 genomes]
rs2028978	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2028979	0.94[ASN][1000 genomes]
rs3912651	1.00[EUR][1000 genomes]
rs55948438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479383	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7479533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7483042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950811	0.94[ASN][1000 genomes]
rs7950849	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1044571	chr11:92495213-92742314	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv898175	chr11:92623349-92668826	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92616800-92630600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:92622200-92630800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:92622400-92631000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:92625400-92630800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:92625400-92634400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:92626200-92630800	Weak transcription	Aorta	Aorta
7	chr11:92627000-92631000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:92627600-92631400	Weak transcription	Fetal Lung	lung
9	chr11:92628000-92631000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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