Variant report

Variant	rs3912651
Chromosome Location	chr11:92486486-92486487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1014662	1.00[EUR][1000 genomes]
rs16918260	1.00[EUR][1000 genomes]
rs2028978	1.00[EUR][1000 genomes]
rs55784576	1.00[EUR][1000 genomes]
rs55948438	1.00[EUR][1000 genomes]
rs7479383	1.00[EUR][1000 genomes]
rs7479533	1.00[EUR][1000 genomes]
rs7483042	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039422	chr11:91577323-92558459	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1043861	chr11:92357570-92689868	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92473800-92496600	Weak transcription	Fetal Lung	lung
2	chr11:92481000-92491000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:92481000-92499200	Weak transcription	Aorta	Aorta
4	chr11:92483000-92493800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:92485600-92492000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:92486000-92491400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:92486200-92486800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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