Variant report
| Variant | rs1840201 |
|---|---|
| Chromosome Location | chr2:125648688-125648689 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10178614 | 1.00[CHD][hapmap] |
| rs2602650 | 1.00[CHD][hapmap];1.00[ASN][1000 genomes] |
| rs35374656 | 1.00[CHD][hapmap] |
| rs41350947 | 1.00[CHD][hapmap] |
| rs67248581 | 1.00[ASN][1000 genomes] |
| rs72848781 | 1.00[ASN][1000 genomes] |
| rs72848782 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834360 | chr2:125492685-125683200 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834361 | chr2:125601081-125810992 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1840201 | WDR33 | cis | parietal | SCAN |
| rs1840201 | AMMECR1L | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
