Variant report

Variant	rs35374656
Chromosome Location	chr2:125579839-125579840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10178614	1.00[CHD][hapmap]
rs10192080	0.86[CEU][hapmap]
rs10206035	0.87[CEU][hapmap]
rs11901852	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs12465517	0.87[CEU][hapmap]
rs1482835	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1482836	0.87[CEU][hapmap]
rs1482837	0.87[CEU][hapmap]
rs1482838	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs17012066	1.00[CEU][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs17012068	1.00[CEU][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs17012070	1.00[CEU][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs17393899	1.00[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840197	1.00[CEU][hapmap]
rs1840200	0.87[CEU][hapmap];0.93[TSI][hapmap]
rs1840201	1.00[CHD][hapmap]
rs2602650	1.00[CHD][hapmap]
rs41350947	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4848263	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs55790719	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6750443	0.87[CEU][hapmap]
rs72847372	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72848759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557008	0.87[CEU][hapmap];0.93[TSI][hapmap]
rs7561882	1.00[CEU][hapmap];0.88[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs7597341	0.87[CEU][hapmap];0.93[TSI][hapmap]
rs7602098	0.87[CEU][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35374656	WDR33	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125579600-125580000	Enhancers	Fetal Stomach	stomach

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