Variant report

Variant	rs1482838
Chromosome Location	chr2:125587628-125587629
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10192080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10206035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11901852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12465517	1.00[JPT][hapmap]
rs1482835	0.89[CEU][hapmap];0.96[EUR][1000 genomes]
rs1482836	1.00[JPT][hapmap]
rs1482837	1.00[JPT][hapmap]
rs17012034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17012037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17012041	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17012049	1.00[JPT][hapmap]
rs17012053	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012066	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012068	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012070	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012082	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012116	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17393899	0.82[EUR][1000 genomes]
rs1840197	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1840200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs314706	0.87[AFR][1000 genomes]
rs314710	1.00[YRI][hapmap]
rs35374656	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs41350947	0.87[CEU][hapmap];0.96[EUR][1000 genomes]
rs4848263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55790719	0.96[EUR][1000 genomes]
rs55906816	0.95[ASN][1000 genomes]
rs56171708	0.96[EUR][1000 genomes]
rs57373389	0.81[ASN][1000 genomes]
rs58960665	0.81[ASN][1000 genomes]
rs59648005	0.95[ASN][1000 genomes]
rs60413051	0.86[ASN][1000 genomes]
rs6716689	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6731611	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6750443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs72847372	0.82[EUR][1000 genomes]
rs72847374	0.87[ASN][1000 genomes]
rs72848759	0.96[EUR][1000 genomes]
rs73953210	0.86[ASN][1000 genomes]
rs73955847	0.86[ASN][1000 genomes]
rs73955850	0.95[ASN][1000 genomes]
rs73955853	0.95[ASN][1000 genomes]
rs7556875	0.86[YRI][hapmap]
rs7557008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7561882	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7597341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7602098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7605407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs922862	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384737	chr2:125587373-125587883	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125580600-125591200	Weak transcription	Fetal Lung	lung

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