Variant report

Variant	rs17012041
Chromosome Location	chr2:125594340-125594341
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10192080	1.00[CHB][hapmap]
rs10206035	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11901852	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12465517	1.00[JPT][hapmap]
rs1482836	1.00[JPT][hapmap]
rs1482837	1.00[JPT][hapmap]
rs1482838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs17012034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17012037	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17012049	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17012053	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17012066	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012082	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17012116	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs1840197	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1840200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4848263	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs55906816	1.00[ASN][1000 genomes]
rs57373389	0.85[ASN][1000 genomes]
rs58960665	0.85[ASN][1000 genomes]
rs59648005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60413051	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6716689	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6731611	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6750443	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72847374	0.82[ASN][1000 genomes]
rs73953210	0.90[ASN][1000 genomes]
rs73955847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73955850	1.00[ASN][1000 genomes]
rs73955853	1.00[ASN][1000 genomes]
rs7557008	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7561882	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7597341	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7602098	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7605407	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs922862	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125591200-125597000	Enhancers	Fetal Lung	lung
2	chr2:125592800-125594600	Enhancers	Fetal Heart	heart
3	chr2:125594200-125594600	Enhancers	Fetal Stomach	stomach
4	chr2:125594200-125595600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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