Variant report

Variant	rs17012116
Chromosome Location	chr2:125636730-125636731
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10165137	0.85[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10168923	0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10185390	1.00[EUR][1000 genomes]
rs10191955	1.00[EUR][1000 genomes]
rs10192080	1.00[CHB][hapmap]
rs10206035	1.00[CHB][hapmap]
rs10210543	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs11901852	1.00[CHB][hapmap]
rs13403519	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs13407542	1.00[EUR][1000 genomes]
rs1482838	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs17012034	1.00[CHB][hapmap]
rs17012037	1.00[CHB][hapmap]
rs17012041	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17012053	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17012066	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs17012068	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs17012070	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs17012082	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs17012102	0.85[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17012123	0.85[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1840197	1.00[CHB][hapmap]
rs1840200	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs1840209	1.00[TSI][hapmap]
rs1840210	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs4848263	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs55644023	1.00[EUR][1000 genomes]
rs55906816	0.85[ASN][1000 genomes]
rs56271052	1.00[EUR][1000 genomes]
rs57373389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58960665	1.00[ASN][1000 genomes]
rs59648005	0.85[ASN][1000 genomes]
rs60413051	0.95[ASN][1000 genomes]
rs6716689	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[ASN][1000 genomes]
rs6731611	1.00[CHB][hapmap]
rs6750443	1.00[CHB][hapmap]
rs73953210	0.95[ASN][1000 genomes]
rs73955850	0.85[ASN][1000 genomes]
rs73955853	0.85[ASN][1000 genomes]
rs7557008	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs7561882	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs7571244	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs7597341	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs7602098	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs7605407	1.00[CHB][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125629200-125637000	Weak transcription	Gastric	stomach
2	chr2:125633200-125638800	Weak transcription	Stomach Mucosa	stomach
3	chr2:125635800-125638400	Weak transcription	Fetal Heart	heart
4	chr2:125636000-125641600	Weak transcription	Fetal Lung	lung

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