Variant report

Variant	rs17012102
Chromosome Location	chr2:125629232-125629233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10165137	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10168923	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10185390	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10187198	0.81[AMR][1000 genomes]
rs10191955	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10202474	0.81[AMR][1000 genomes]
rs10210076	1.00[YRI][hapmap]
rs10210543	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs11886397	0.81[AMR][1000 genomes]
rs13403519	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13407542	1.00[EUR][1000 genomes]
rs13427883	0.96[YRI][hapmap]
rs13427956	1.00[YRI][hapmap]
rs17012116	0.85[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17012123	1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1840209	0.85[GIH][hapmap];0.89[LWK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs1840210	0.87[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs55644023	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56271052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57373389	1.00[EUR][1000 genomes]
rs62171358	0.81[AMR][1000 genomes]
rs62171359	0.81[AMR][1000 genomes]
rs62173261	0.81[AMR][1000 genomes]
rs73955848	0.81[AMR][1000 genomes]
rs73955852	0.81[AMR][1000 genomes]
rs7567297	0.81[AMR][1000 genomes]
rs7571244	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7604892	0.81[AMR][1000 genomes]
rs7606120	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv834361	chr2:125601081-125810992	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125629200-125637000	Weak transcription	Gastric	stomach

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