Variant report

Variant	rs10210543
Chromosome Location	chr2:125584071-125584072
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10165137	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs10168614	0.95[YRI][hapmap]
rs10168923	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10172428	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10178614	0.83[LWK][hapmap]
rs10182183	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs10185390	0.81[AMR][1000 genomes]
rs10187198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191955	0.81[AMR][1000 genomes]
rs10202474	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10204235	1.00[CEU][hapmap]
rs11886397	1.00[CEU][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11904176	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13403519	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs13414179	1.00[CEU][hapmap]
rs17012102	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs17012116	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs17012123	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1840209	0.85[GIH][hapmap];1.00[TSI][hapmap]
rs1840210	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs56271052	0.81[AMR][1000 genomes]
rs62171358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62171359	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62173261	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73955848	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73955852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7559266	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7567297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7571244	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7604892	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7605407	1.00[CEU][hapmap]
rs7606120	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125580600-125591200	Weak transcription	Fetal Lung	lung

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