Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10168614	0.90[YRI][hapmap]
rs10172428	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs10182183	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs10187198	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10202474	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10204235	1.00[CEU][hapmap]
rs10210543	1.00[CEU][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11886397	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11904176	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs13403519	1.00[CEU][hapmap]
rs13414179	1.00[CEU][hapmap]
rs62171358	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62171359	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62173261	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73955848	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73955852	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7567297	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7571244	1.00[CEU][hapmap]
rs7604892	1.00[CEU][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7605407	1.00[CEU][hapmap]
rs7606120	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125580600-125591200	Weak transcription	Fetal Lung	lung
2	chr2:125588400-125589000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: