Variant report

Variant	rs62171359
Chromosome Location	chr2:125589353-125589354
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10165137	0.81[AMR][1000 genomes]
rs10185390	0.81[AMR][1000 genomes]
rs10187198	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10191955	0.81[AMR][1000 genomes]
rs10202474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10210543	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11886397	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17012102	0.81[AMR][1000 genomes]
rs56271052	0.81[AMR][1000 genomes]
rs62171358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62173261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73955848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73955852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7559266	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7567297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7604892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7606120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834360	chr2:125492685-125683200	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:125580600-125591200	Weak transcription	Fetal Lung	lung
2	chr2:125589000-125589600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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