Variant report
| Variant | rs10210076 |
|---|---|
| Chromosome Location | chr2:125627548-125627549 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10165137 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10168923 | 1.00[EUR][1000 genomes] |
| rs10185390 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10187198 | 0.81[AMR][1000 genomes] |
| rs10191955 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10202474 | 0.81[AMR][1000 genomes] |
| rs10210543 | 0.81[AMR][1000 genomes] |
| rs11886397 | 0.81[AMR][1000 genomes] |
| rs13407542 | 1.00[EUR][1000 genomes] |
| rs13427883 | 0.96[YRI][hapmap] |
| rs13427956 | 1.00[YRI][hapmap] |
| rs17012102 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17012116 | 1.00[EUR][1000 genomes] |
| rs17012123 | 1.00[EUR][1000 genomes] |
| rs1840209 | 0.96[YRI][hapmap] |
| rs55644023 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56271052 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57373389 | 1.00[EUR][1000 genomes] |
| rs62171358 | 0.81[AMR][1000 genomes] |
| rs62171359 | 0.81[AMR][1000 genomes] |
| rs62173261 | 0.81[AMR][1000 genomes] |
| rs73955848 | 0.81[AMR][1000 genomes] |
| rs73955852 | 0.81[AMR][1000 genomes] |
| rs7567297 | 0.81[AMR][1000 genomes] |
| rs7604892 | 0.81[AMR][1000 genomes] |
| rs7606120 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834360 | chr2:125492685-125683200 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv834361 | chr2:125601081-125810992 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
