Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53584684..53586821-chr3:53697849..53700213,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1037827	0.89[EUR][1000 genomes]
rs1380606	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1401494	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2250736	0.96[CEU][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2612022	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2633707	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2680654	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2680656	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3774486	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3774491	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs6445591	0.84[EUR][1000 genomes]
rs6786135	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs754063	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7630805	0.92[CEU][hapmap]
rs898415	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs898416	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs898422	0.90[YRI][hapmap]
rs930949	0.88[EUR][1000 genomes]
rs9850569	0.81[CEU][hapmap]
rs9883910	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53677600-53700000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53683200-53744200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:53684800-53698600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:53689600-53707400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:53692000-53707600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:53694200-53699000	Strong transcription	Fetal Intestine Small	intestine
7	chr3:53694200-53699200	Strong transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:53694200-53700400	Strong transcription	Fetal Intestine Large	intestine
9	chr3:53694400-53701000	Weak transcription	Fetal Kidney	kidney
10	chr3:53695800-53698600	Strong transcription	Fetal Lung	lung
11	chr3:53696000-53700200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:53696800-53706600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr3:53697400-53698800	ZNF genes & repeats	Spleen	Spleen
14	chr3:53697400-53699000	Enhancers	Placenta	Placenta
15	chr3:53697600-53702400	Weak transcription	Liver	Liver

Quick Search: