Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1037827	0.89[EUR][1000 genomes]
rs11130373	0.82[EUR][1000 genomes]
rs1380606	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1401494	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1841291	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2250736	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2612022	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2633707	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2680654	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2680656	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3774481	0.84[EUR][1000 genomes]
rs3774491	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6445590	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6445591	0.93[EUR][1000 genomes]
rs6786135	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs754063	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs898415	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs898416	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs930949	0.88[EUR][1000 genomes]
rs9850569	0.81[EUR][1000 genomes]
rs9883910	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
2	chr3:53657800-53661400	Strong transcription	Fetal Intestine Large	intestine
3	chr3:53659000-53662400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:53659000-53662800	Weak transcription	Fetal Brain Male	brain
5	chr3:53659200-53663400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:53659400-53664600	Weak transcription	Fetal Kidney	kidney
7	chr3:53659600-53662800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr3:53659600-53662800	Weak transcription	Fetal Brain Female	brain
9	chr3:53659600-53663400	Weak transcription	Lung	lung
10	chr3:53659600-53663600	Weak transcription	Pancreas	Pancrea
11	chr3:53659800-53661600	Enhancers	Stomach Mucosa	stomach
12	chr3:53660200-53662600	Weak transcription	Brain Germinal Matrix	brain
13	chr3:53660400-53661600	Strong transcription	Fetal Intestine Small	intestine
14	chr3:53660400-53661600	Enhancers	Fetal Lung	lung

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