Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11130373	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1380606	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1599230	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2612022	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2633707	0.81[CEU][hapmap]
rs2680654	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2680656	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs3774472	0.86[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3774475	0.88[ASN][1000 genomes]
rs3774486	0.84[EUR][1000 genomes]
rs3774491	0.92[CEU][hapmap]
rs6445590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6786135	0.92[CEU][hapmap];0.88[YRI][hapmap];0.84[EUR][1000 genomes]
rs6803904	0.82[CEU][hapmap];0.96[CHB][hapmap]
rs754063	0.83[EUR][1000 genomes]
rs7630805	0.92[CEU][hapmap]
rs898415	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs898416	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9810888	0.95[CHB][hapmap]
rs9846874	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9850569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9866078	0.81[CEU][hapmap];0.95[CHB][hapmap];0.81[AMR][1000 genomes]
rs9883910	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53658400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53652800-53658400	Weak transcription	Lung	lung
3	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
4	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53656800-53658200	Enhancers	Brain Germinal Matrix	brain
6	chr3:53657000-53658000	Enhancers	Fetal Brain Male	brain
7	chr3:53657200-53658400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:53657400-53658600	Enhancers	Fetal Kidney	kidney
9	chr3:53657600-53658200	Enhancers	Fetal Lung	lung
10	chr3:53657600-53659000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:53657800-53659400	Enhancers	Placenta	Placenta
12	chr3:53657800-53661400	Strong transcription	Fetal Intestine Large	intestine

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