Variant report

Variant	rs6445590
Chromosome Location	chr3:53655932-53655933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:53616524..53618265-chr3:53654057..53656275,2	K562	blood:
2	chr3:53620892..53622779-chr3:53653640..53656447,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11130373	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1380606	0.90[CEU][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1599230	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2612022	0.91[CEU][hapmap]
rs2680654	0.91[CEU][hapmap]
rs2680656	0.90[CEU][hapmap]
rs3774472	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3774475	0.90[ASN][1000 genomes]
rs3774481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3774486	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs3774491	0.90[CEU][hapmap]
rs6786135	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs6803904	0.81[CEU][hapmap];0.96[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs754063	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7630805	0.90[CEU][hapmap]
rs898415	0.90[CEU][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs898416	0.90[CEU][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs936450	0.83[JPT][hapmap]
rs9810888	0.95[CHB][hapmap]
rs9846874	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9850569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9859951	0.83[JPT][hapmap]
rs9866078	0.81[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9883910	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53658400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53652800-53658400	Weak transcription	Lung	lung
3	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
4	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53654000-53657800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:53655400-53656800	Weak transcription	Brain Germinal Matrix	brain

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