Variant report

Variant	rs3774475
Chromosome Location	chr3:53650483-53650484
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11130373	0.88[ASN][1000 genomes]
rs1599230	0.96[ASN][1000 genomes]
rs3774472	0.83[ASN][1000 genomes]
rs3774481	0.88[ASN][1000 genomes]
rs6445590	0.90[ASN][1000 genomes]
rs6803904	0.80[ASN][1000 genomes]
rs9810888	0.83[ASN][1000 genomes]
rs9846874	0.96[ASN][1000 genomes]
rs9850569	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53640000-53650800	Weak transcription	Fetal Intestine Large	intestine
2	chr3:53645400-53651000	Weak transcription	Lung	lung
3	chr3:53646800-53651000	Weak transcription	Spleen	Spleen
4	chr3:53648800-53651600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:53649600-53651200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:53649800-53650800	Weak transcription	Colonic Mucosa	Colon
7	chr3:53650000-53651000	Bivalent Enhancer	Adipose Nuclei	Adipose
8	chr3:53650000-53651200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:53650000-53651200	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:53650000-53651200	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr3:53650000-53651400	Enhancers	Fetal Kidney	kidney
12	chr3:53650000-53651400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:53650000-53652000	Enhancers	Fetal Lung	lung
14	chr3:53650200-53650600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr3:53650200-53650600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:53650200-53650600	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:53650200-53650800	Enhancers	Brain Germinal Matrix	brain
18	chr3:53650200-53651000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:53650200-53651200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr3:53650200-53651400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr3:53650200-53651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:53650200-53651400	Enhancers	Fetal Muscle Leg	muscle
23	chr3:53650200-53651400	Enhancers	Placenta	Placenta
24	chr3:53650200-53653200	Strong transcription	Fetal Intestine Small	intestine
25	chr3:53650400-53650600	Flanking Active TSS	Fetal Brain Male	brain
26	chr3:53650400-53650800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr3:53650400-53650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr3:53650400-53651000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:53650400-53651400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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