Variant report

Variant	rs11130373
Chromosome Location	chr3:53657054-53657055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1380606	0.82[EUR][1000 genomes]
rs1599230	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3774472	0.81[EUR][1000 genomes]
rs3774475	0.88[ASN][1000 genomes]
rs3774481	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774486	0.82[EUR][1000 genomes]
rs6445590	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6786135	0.82[EUR][1000 genomes]
rs754063	0.80[EUR][1000 genomes]
rs898415	0.82[EUR][1000 genomes]
rs898416	0.82[EUR][1000 genomes]
rs9846874	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9850569	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9883910	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53652800-53658400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:53652800-53658400	Weak transcription	Lung	lung
3	chr3:53652800-53684000	Weak transcription	Right Atrium	heart
4	chr3:53653200-53660400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:53654000-53657800	Weak transcription	Fetal Intestine Large	intestine
6	chr3:53656800-53658200	Enhancers	Brain Germinal Matrix	brain
7	chr3:53657000-53657200	Enhancers	Placenta	Placenta
8	chr3:53657000-53658000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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