Variant report

Variant	rs3774472
Chromosome Location	chr3:53638200-53638201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11130373	0.81[EUR][1000 genomes]
rs1380606	1.00[YRI][hapmap]
rs1401494	1.00[YRI][hapmap]
rs1599230	0.96[CEU][hapmap];0.91[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1599231	1.00[YRI][hapmap]
rs2250736	1.00[YRI][hapmap]
rs2612022	1.00[YRI][hapmap]
rs2680654	1.00[YRI][hapmap]
rs2680656	1.00[YRI][hapmap]
rs3774475	0.83[ASN][1000 genomes]
rs3774481	0.86[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6445590	0.86[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6803904	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs898415	1.00[YRI][hapmap]
rs898416	1.00[YRI][hapmap]
rs9810888	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9846874	0.96[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9850569	0.85[CEU][hapmap];0.91[CHB][hapmap];0.81[EUR][1000 genomes]
rs9866078	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53632200-53639600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:53632200-53640400	Weak transcription	Fetal Lung	lung
4	chr3:53635200-53645200	Weak transcription	Lung	lung
5	chr3:53635400-53650200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:53637200-53638200	Weak transcription	Fetal Intestine Small	intestine
7	chr3:53637400-53639200	Weak transcription	Fetal Intestine Large	intestine
8	chr3:53638200-53639400	Strong transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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