Variant report

Variant	rs6803904
Chromosome Location	chr3:53635375-53635376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1599230	0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3774472	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3774475	0.80[ASN][1000 genomes]
rs3774481	0.82[CEU][hapmap];0.96[CHB][hapmap]
rs6445590	0.81[CEU][hapmap];0.96[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9810888	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846874	0.92[CEU][hapmap];0.95[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9850569	0.81[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes]
rs9866078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53605800-53645200	Weak transcription	Pancreas	Pancrea
2	chr3:53623600-53637200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:53631800-53636800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:53632200-53639600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:53632200-53640400	Weak transcription	Fetal Lung	lung
6	chr3:53633600-53635800	Strong transcription	Fetal Intestine Large	intestine
7	chr3:53635000-53635400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:53635200-53645200	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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