Variant report

Variant	rs1841823
Chromosome Location	chr4:22493757-22493758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:22488399..22490950-chr4:22493521..22495053,2	MCF-7	breast:
2	chr4:22486301..22488142-chr4:22490876..22493757,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10938903	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11728370	0.80[CHB][hapmap]
rs12504167	0.83[ASN][1000 genomes]
rs13103323	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13113896	0.91[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs13135791	0.87[ASN][1000 genomes]
rs1381915	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs1462987	0.86[CHB][hapmap]
rs1462988	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16872759	0.80[CHB][hapmap]
rs4631026	0.86[CHB][hapmap];0.81[CHD][hapmap]
rs4697014	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4697015	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4697018	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4697308	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4697309	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4697312	0.88[ASN][1000 genomes]
rs6818597	0.84[JPT][hapmap]
rs6818676	0.86[CHB][hapmap];0.84[CHD][hapmap]
rs7670164	0.82[ASN][1000 genomes]
rs7692390	0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[MEX][hapmap];0.83[ASN][1000 genomes]
rs7697048	0.95[CHB][hapmap];0.88[CHD][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv878752	chr4:22414023-22501043	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22484800-22498400	Weak transcription	Gastric	stomach
2	chr4:22485000-22506000	Weak transcription	Esophagus	oesophagus
3	chr4:22485600-22501400	Weak transcription	Hela-S3	cervix
4	chr4:22485600-22502000	Weak transcription	A549	lung
5	chr4:22486400-22500600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:22488000-22494600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:22488400-22503000	Weak transcription	Small Intestine	intestine
8	chr4:22488600-22516000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:22488800-22496800	Weak transcription	HMEC	breast
10	chr4:22488800-22497800	Weak transcription	NHEK	skin
11	chr4:22488800-22503600	Weak transcription	NHLF	lung
12	chr4:22489400-22496800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:22489400-22496800	Weak transcription	Fetal Stomach	stomach
14	chr4:22489400-22500600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:22489600-22503800	Weak transcription	HSMM	muscle
16	chr4:22490200-22494600	Weak transcription	Left Ventricle	heart
17	chr4:22490200-22500600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:22490200-22501600	Weak transcription	Psoas Muscle	Psoas
19	chr4:22490200-22503600	Weak transcription	Right Ventricle	heart
20	chr4:22490200-22508600	Weak transcription	Right Atrium	heart
21	chr4:22490400-22494000	Enhancers	Fetal Intestine Large	intestine
22	chr4:22490800-22493800	Enhancers	Fetal Intestine Small	intestine
23	chr4:22492000-22495000	Enhancers	HepG2	liver
24	chr4:22492200-22494600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr4:22492200-22494600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr4:22492400-22494600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr4:22492400-22494600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:22492400-22495400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:22492400-22495400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr4:22492600-22494000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr4:22492600-22495600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr4:22492600-22500800	Weak transcription	Fetal Heart	heart
33	chr4:22492800-22493800	Enhancers	Duodenum Mucosa	Duodenum
34	chr4:22492800-22494200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:22492800-22494200	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr4:22492800-22494600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr4:22492800-22495200	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:22492800-22497800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:22492800-22497800	Weak transcription	Pancreas	Pancrea
40	chr4:22492800-22501400	Weak transcription	Liver	Liver
41	chr4:22492800-22506000	Weak transcription	Lung	lung
42	chr4:22493000-22493800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr4:22493000-22495000	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:22493200-22493800	Enhancers	H1 Cell Line	embryonic stem cell
45	chr4:22493200-22493800	Enhancers	H9 Cell Line	embryonic stem cell
46	chr4:22493200-22493800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr4:22493200-22493800	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr4:22493200-22494400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr4:22493200-22504000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr4:22493400-22494200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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