Variant report

Variant	rs184216260
Chromosome Location	chr15:41587630-41587631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41581933..41584889-chr15:41587370..41590303,3	K562	blood:
2	chr15:41587115..41589389-chr15:41693080..41695951,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137806	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	nsv1038923	chr15:41585028-41754890	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1045142	chr15:41585044-41738314	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	esv3424205	chr15:41586900-41587742	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41577400-41610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:41577600-41606400	Weak transcription	Stomach Mucosa	stomach
3	chr15:41577800-41589000	Weak transcription	Esophagus	oesophagus
4	chr15:41577800-41591600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:41578000-41588400	Weak transcription	Right Atrium	heart
6	chr15:41578000-41591600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:41578200-41591800	Strong transcription	Fetal Stomach	stomach
8	chr15:41578200-41592600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:41578400-41592600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:41578800-41587800	Strong transcription	Fetal Muscle Leg	muscle
11	chr15:41578800-41591800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:41579200-41593200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr15:41579200-41612400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:41580000-41592600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:41580600-41603200	Weak transcription	Psoas Muscle	Psoas
16	chr15:41581000-41588400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:41581000-41590000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:41581000-41593200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:41581200-41588200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr15:41581200-41589000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:41581200-41589000	Weak transcription	Ovary	ovary
22	chr15:41581200-41589000	Weak transcription	Spleen	Spleen
23	chr15:41581200-41589000	Weak transcription	HSMMtube	muscle
24	chr15:41581200-41589200	Weak transcription	Colonic Mucosa	Colon
25	chr15:41581200-41589200	Weak transcription	Pancreas	Pancrea
26	chr15:41581200-41592200	Weak transcription	Brain Angular Gyrus	brain
27	chr15:41581200-41592200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:41581200-41592400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr15:41581200-41593000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:41581200-41595200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:41581200-41596000	Weak transcription	Small Intestine	intestine
32	chr15:41581200-41598400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:41581200-41601400	Weak transcription	NHDF-Ad	bronchial
34	chr15:41581200-41602200	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:41581200-41602600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:41581200-41604800	Weak transcription	Gastric	stomach
37	chr15:41581200-41605000	Weak transcription	Brain Substantia Nigra	brain
38	chr15:41581200-41607000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr15:41581200-41609600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr15:41581200-41623600	Weak transcription	Fetal Brain Male	brain
41	chr15:41581400-41589200	Weak transcription	HUVEC	blood vessel
42	chr15:41581400-41605000	Weak transcription	HMEC	breast
43	chr15:41581400-41610400	Weak transcription	NHLF	lung
44	chr15:41581600-41588400	Strong transcription	Dnd41	blood
45	chr15:41581600-41589000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:41581600-41589200	Weak transcription	Placenta	Placenta
47	chr15:41581600-41589400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:41581600-41589800	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:41581600-41590800	Weak transcription	Osteobl	bone
50	chr15:41581600-41592200	Weak transcription	NH-A	brain

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