Variant report

Variant	rs1846075
Chromosome Location	chr3:21036913-21036914
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12491034	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12636382	0.91[ASN][1000 genomes]
rs13065045	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13072255	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13072899	0.82[AMR][1000 genomes]
rs13073440	0.89[AMR][1000 genomes]
rs17007963	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1846074	0.83[ASN][1000 genomes]
rs1846076	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2173234	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34075807	0.82[AMR][1000 genomes]
rs35663760	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6803390	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71310234	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7627738	0.91[ASN][1000 genomes]
rs9310635	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs967336	0.81[AMR][1000 genomes]
rs9825480	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999025	chr3:20738244-21042249	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv834629	chr3:20878902-21057592	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv876606	chr3:20957851-21049235	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv876607	chr3:20972475-21087219	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv876608	chr3:21008710-21203048	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1014809	chr3:21024655-21060336	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21032000-21040000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:21033400-21039600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:21033800-21039000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:21035400-21038400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:21035600-21038800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:21036200-21038600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:21036400-21037000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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